Publications of P. Bork in the journal "PLoS One".

Publications of P. Bork in the journal "PLoS One".

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2021 1 publication(s).
13.
Coupling proteomics and metabolomics for the unsupervised identification of protein-metabolite interactions in Chaetomium thermophilum.
Li YY, Kuhn M, Zukowska-Kasprzyk J, Hennrich ML, Kastritis PL, O'Reilly FJ, Phapale P, Beck M, Gavin AC, Bork P
PLoS One.
2021; 16(7): e0254429. PubMed: 34242379.
Abstract + PDF
2017 1 publication(s).
12.
metaSNV: A tool for metagenomic strain level analysis.
Costea PI, Munch R, Coelho LP, Paoli L, Sunagawa S, Bork P
PLoS One.
2017; 12(7): e0182392. PubMed: 28753663.
Abstract + PDF
2016 2 publication(s).
11.
The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex.
Silva-Martin N, Daudén MI, Glatt S, Hoffmann NA, Kastritis P, Bork P, Beck M, Müller CW
PLoS One.
2016; 11(1): e0146457. PubMed: 26745716.
Abstract + PDF
10.
Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing.
Vogtmann E, Hua X, Zeller G, Sunagawa S, Voigt AY, Hercog R, Goedert JJ, Shi J, Bork P, Sinha R
PLoS One.
2016; 11(5): e0155362. PubMed: 27171425.
Abstract + PDF
2014 1 publication(s).
9.
A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation.
PLoS One.
2014; 9(11): e111122. PubMed: 25369365.
Abstract + PDF
2012 3 publication(s).
8.
Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins.
PLoS One.
2012; 7(4): e34302. PubMed: 22485162.
Abstract + PDF
7.
MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit.
Kultima JR, Sunagawa S, Li J, Chen W, Chen H, Mende DR, Arumugam M, Pan Q, Liu B, Qin J, Wang J, Bork P
PLoS One.
2012; 7(10): e47656. PubMed: 23082188.
Abstract + PDF
6.
Assessment of metagenomic assembly using simulated next generation sequencing data.
Mende DR, Waller AS, Sunagawa S, Järvelin AI, Chan MM, Arumugam M, Raes J, Bork P
PLoS One.
2012; 7(2): e31386. PubMed: 22384016.
Abstract + PDF
2011 2 publication(s).
5.
Network neighbors of drug targets contribute to drug side-effect similarity.
PLoS One.
2011; 6(7): e22187. PubMed: 21765950.
Abstract + PDF
4.
Universally distributed single-copy genes indicate a constant rate of horizontal transfer.
Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P
PLoS One.
2011; 6(8): e22099. PubMed: 21850220.
Abstract + PDF
2008 3 publication(s).
3.
A computational screen for type I polyketide synthases in metagenomics shotgun data.
Foerstner KU, Doerks T, Creevey CJ, Doerks A, Bork P
PLoS One.
2008; 3(10): e3515. PubMed: 18953415.
Abstract + PDF
2.
A Nitrile Hydratase in the Eukaryote Monosiga brevicollis.
PLoS One.
2008; 3(12): e3976. PubMed: 19096720.
Abstract + PDF
1.
A Molecular Study of Microbe Transfer between Distant Environments.
PLoS One.
2008 Jul 9; 3(7): e2607. PubMed: 18612393.
Abstract + PDF