Publications of FD. Ciccarelli

Publications of FD. Ciccarelli

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2008 1 publication(s).
19.
Non-random retention of protein-coding overlapping genes in Metazoa.
Solda' G, Suyama M, Pelucchi P, Boi S, Guffanti A, Rizzi E, Bork P, Tenchini ML, Ciccarelli FD
2008 Apr 16; 9(1): 174. Epub 2008 Apr 16; PubMed: 18416813.
Abstract + PDF
2006 1 publication(s).
18.
Toward automatic reconstruction of a highly resolved tree of life.
2006 Mar 3; 311(5765): 1283-7. PubMed: 16513982. Media echos.
Abstract + PDF
2005 4 publication(s).
17.
The WHy domain mediates the response to desiccation in plants and bacteria.
Ciccarelli FD, Bork P
2005 Apr 15; 21(8): 1304-7. Epub 2004 Dec 14; PubMed: 15598830.
Abstract + PDF
16.
Complex genomic rearrangements lead to novel primate gene function.
Ciccarelli FD, von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P
2005 Mar; 15(3): 343-51. Epub 2005 Feb 14; PubMed: 15710750. Media echos.
Abstract + PDF
15.
Generation and annotation of the DNA sequences of human chromosomes 2 and 4.
Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Kremitzki C, Oddy L, Du H, Sun H, Bradshaw-Cordum H, Ali J, Carter J, Cordes M, Harris A, Isak A, van Brunt A, Nguyen C, Du F, Courtney L, Kalicki J, Ozersky P, Abbott S, Armstrong J, Belter EA, Caruso L, Cedroni M, Cotton M, Davidson T, Desai A, Elliott G, Erb T, Fronick C, Gaige T, Haakenson W, Haglund K, Holmes A, Harkins R, Kim K, Kruchowski SS, Strong CM, Grewal N, Goyea E, Hou S, Levy A, Martinka S, Mead K, McLellan MD, Meyer R, Randall-Maher J, Tomlinson C, Dauphin-Kohlberg S, Kozlowicz-Reilly A, Shah N, Swearengen-Shahid S, Snider J, Strong JT, Thompson J, Yoakum M, Leonard S, Pearman C, Trani L, Radionenko M, Waligorski JE, Wang C, Rock SM, Tin-Wollam AM, Maupin R, Latreille P, Wendl MC, Yang SP, Pohl C, Wallis JW, Spieth J, Bieri TA, Berkowicz N, Nelson JO, Osborne J, Ding L, Meyer R, Sabo A, Shotland Y, Sinha P, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Jones TA, She X, Ciccarelli FD, Izaurralde E, Taylor J, Schmutz J, Myers RM, Cox DR, Huang X, McPherson JD, Mardis ER, Clifton SW, Warren WC, Chinwalla AT, Eddy SR, Marra MA, Ovcharenko I, Furey TS, Miller W, Eichler EE, Bork P, Suyama M, Torrents D, Waterston RH, Wilson RK
2005 Apr 7; 434(7034): 724-31. PubMed: 15815621.
Abstract + PDF
14.
Very-KIND is a novel nervous system specific guanine nucleotide exchange factor for Ras GTPases.
Mees A, Rock R, Ciccarelli FD, Leberfinger CB, Borawski JM, Bork P, Wiese S, Gessler M, Kerkhoff E
2005 Dec; 6(1): 79-85. Epub 2005 Aug 15; PubMed: 16099729.
Abstract + PDF
2004 2 publication(s).
13.
RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear mRNA export.
Forler D, Rabut G, Ciccarelli FD, Herold A, Köcher T, Niggeweg R, Bork P, Ellenberg J, Izaurralde E
2004 Feb; 24(3): 1155-67. PubMed: 14729961.
Abstract + PDF
12.
SMART 4.0: towards genomic data integration.
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P
2004 Jan 1; 32(Database issue): D142-4. PubMed: 14681379.
Abstract + PDF
2003 6 publication(s).
11.
The KIND module: a putative signalling domain evolved from the C lobe of the protein kinase fold.
Ciccarelli FD, Bork P, Kerkhoff E
2003 Jul; 28(7): 349-52. PubMed: 12877999.
PDF
10.
The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.
Ciccarelli FD, Izaurralde E, Bork P
2003 Dec 19; 4: 64. Epub 2003 Dec 19; PubMed: 14687415.
Abstract + PDF
9.
The identification of a conserved domain in both spartin and spastin, mutated in hereditary spastic paraplegia.
Ciccarelli FD, Proukakis C, Patel H, Cross H, Azam S, Patton MA, Bork P, Crosby AH
2003 Apr; 81(4): 437-41. PubMed: 12676568.
Abstract + PDF
8.
Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways.
Gatfield D, Unterholzner L, Ciccarelli FD, Bork P, Izaurralde E
2003 Aug 1; 22(15): 3960-70. PubMed: 12881430.
Abstract + PDF
7.
A protocol for the update of references to scientific literature in biological databases.
Perez-Iratxeta C, Astola N, Ciccarelli FD, Shah PK, Bork P, Andrade MA
2003; 2(3): 189-91. PubMed: 15130808.
Abstract + PDF
6.
Genome evolution reveals biochemical networks and functional modules.
von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P
2003 Dec 23; 100(26): 15428-33. Epub 2003 Dec 12; PubMed: 14673105.
Abstract + PDF
2002 5 publication(s).
5.
A complex prediction: three-dimensional model of the yeast exosome.
Aloy P, Ciccarelli FD, Leutwein C, Gavin AC, Superti-Furga G, Bork P, Bottcher B, Russell RB
2002 Jul; 3(7): 628-35. PubMed: 12101094.
Abstract + PDF
4.
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria.
2002 Aug 15; 3(9): RESEARCH0047. Epub 2002 Aug 15; PubMed: 12225586.
Abstract + PDF
3.
CASH--a beta-helix domain widespread among carbohydrate-binding proteins.
Ciccarelli FD, Copley RR, Doerks T, Russell RB, Bork P
2002 Feb; 27(2): 59-62. PubMed: 11852237.
Abstract + PDF
2.
AMOP, a protein module alternatively spliced in cancer cells.
Ciccarelli FD, Doerks T, Bork P
2002 Mar; 27(3): 113-5. PubMed: 11893501.
Abstract + PDF
1.
SPG20 is mutated in Troyer syndrome, an hereditary spastic paraplegia.
Patel H, Cross H, Proukakis C, Hershberger R, Bork P, Ciccarelli FD, Patton MA, McKusick VA, Crosby AH
2002 Aug; 31(4): 347-8. Epub 2002 Jul 22; PubMed: 12134148.
Abstract + PDF