Publications of J. Schultz

Publications of J. Schultz

The individual publication lists here have to be considered only in the context of the Bork Group.
Authors in this color are/were of Bork Group. [Altmetric off].
The manuscripts available on our site are provided for your personal use only and may not be retransmitted or redistributed without written permissions from the paper's publisher and author. You may not upload any of this site's material to any public server, on-line service, network, or bulletin board without prior written permission from the publisher and author. You may not make copies for any commercial purpose. Please email us for any paper request!
2008 1 publication(s).
26.
Heat shock protein-90-alpha, a prolactin-STAT5 target gene identified in breast cancer cells, is involved in apoptosis regulation.
Perotti C, Liu R, Parusel C, Boecher N, Schultz J, Bork P, Pfitzner E, Groner B, Shemanko C
Breast Cancer Res.
2008 Nov 13; 10(6): R94. Epub 2008 Nov 13; PubMed: 19014541.
Abstract + PDF
2006 1 publication(s).
25.
SMART 5: domains in the context of genomes and networks.
Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bork P
Nucleic Acids Res.
2006 Jan 1; 34(Database issue): D257-60. PubMed: 16381859.
Abstract + PDF
2005 1 publication(s).
24.
Structural Genomics of human proteins - target selection and generation of a public catalog of expression clones.
Bussow K, Scheich C, Sievert V, Harttig U, Schultz J, Simon B, Bork P, Lehrach H, Heinemann U
Microb Cell Fact.
2005 Jul 5; 4: 21. Epub 2005 Jul 5; PubMed: 15998469.
Abstract + PDF
2004 1 publication(s).
23.
SMART 4.0: towards genomic data integration.
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P
Nucleic Acids Res.
2004 Jan 1; 32(Database issue): D142-4. PubMed: 14681379.
Abstract + PDF
2002 6 publication(s).
22.
Sequence analysis of multidomain proteins: past perspectives and future directions.
Copley RR, Ponting CP, Schultz J, Bork P
Adv Protein Chem.
2002; 61: 75-98. PubMed: 12461821.
PDF
21.
Systematic identification of novel protein domain families associated with nuclear functions.
Doerks T, Copley RR, Schultz J, Ponting CP, Bork P
Genome Res.
2002 Jan; 12(1): 47-56. PubMed: 11779830.
Abstract + PDF
20.
Functional organization of the yeast proteome by systematic analysis of protein complexes.
Gavin AC, Bösche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Höfert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, Superti-Furga G
Nature.
2002 Jan 10; 415(6868): 141-7. PubMed: 11805826. Media echos.
Abstract + PDF
19.
Recent improvements to the SMART domain-based sequence annotation resource.
Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P
Nucleic Acids Res.
2002 Jan 1; 30(1): 242-4. PubMed: 11752305.
Abstract + PDF
18.
Predicting protein cellular localization using a domain projection method.
Mott R, Schultz J, Bork P, Ponting CP
Genome Res.
2002 Aug; 12(8): 1168-74. PubMed: 12176924.
Abstract + PDF
17.
Initial sequencing and comparative analysis of the mouse genome.
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigó R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES, Mouse Genome Sequencing Consortium
Nature.
2002 Dec 5; 420(6915): 520-62. PubMed: 12466850. Media echos.
Abstract + PDF
2001 2 publication(s).
16.
Initial sequencing and analysis of the human genome.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, Levine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blöcker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowski J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, Szustakowki J, International Human Genome Sequencing Consortium
Nature.
2001 Feb 15; 409(6822): 860-921. PubMed: 11237011. Media echos.
Abstract + PDF
15.
Molecular characterization of a cDNA encoding functional human CLK4 kinase and localization to chromosome 5q35 [correction of 4q35].
Schultz J, Jones T, Bork P, Sheer D, Blencke S, Steyrer S, Wellbrock U, Bevec D, Ullrich A, Wallasch C
Genomics.
2001 Feb 1; 71(3): 368-70. PubMed: 11170754.
Abstract + PDF
2000 4 publication(s).
14.
Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines.
Dimopoulos G, Casavant TL, Chang S, Scheetz T, Roberts C, Donohue M, Schultz J, Benes V, Bork P, Ansorge W, Soares MB, Kafatos FC
Proc Natl Acad Sci U S A.
2000 Jun 6; 97(12): 6619-24. PubMed: 10841561.
Abstract + PDF
13.
Evolution of domain families.
Ponting CP, Schultz J, Copley RR, Andrade MA, Bork P
Adv Protein Chem.
2000; 54: 185-244. PubMed: 10829229.
PDF
12.
SMART: a web-based tool for the study of genetically mobile domains.
Schultz J, Copley RR, Doerks T, Ponting CP, Bork P
Nucleic Acids Res.
2000 Jan 1; 28(1): 231-4. PubMed: 10592234.
Abstract + PDF
11.
More than 1,000 putative new human signalling proteins revealed by EST data mining.
Schultz J, Doerks T, Ponting CP, Copley RR, Bork P
Nat Genet.
2000 Jun; 25(2): 201-4. PubMed: 10835637.
Abstract + PDF
1999 4 publication(s).
10.
Protein families in multicellular organisms.
Copley RR, Schultz J, Ponting CP, Bork P
Curr Opin Struct Biol.
1999 Jun; 9(3): 408-15. PubMed: 10361098.
Abstract + PDF
9.
Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer.
Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV
J Mol Biol.
1999 Jun 18; 289(4): 729-45. PubMed: 10369758.
Abstract + PDF
8.
No Sec7-homology domain in guanine-nucleotide-exchange factors that act on Ras and Rho.
Ponting CP, Bork P, Schultz J, Aravind L
Trends Biochem Sci.
1999 May; 24(5): 177-8. PubMed: 10322430.
PDF
7.
SMART: identification and annotation of domains from signalling and extracellular protein sequences.
Ponting CP, Schultz J, Milpetz F, Bork P
Nucleic Acids Res.
1999 Jan 1; 27(1): 229-32. PubMed: 9847187.
Abstract + PDF
1998 1 publication(s).
6.
SMART, a simple modular architecture research tool: identification of signaling domains.
Schultz J, Milpetz F, Bork P, Ponting CP
Proc Natl Acad Sci U S A.
1998 May 26; 95(11): 5857-64. PubMed: 9600884.
Abstract + PDF
1997 4 publication(s).
5.
Cytoplasmic signalling domains: the next generation.
Bork P, Schultz J, Ponting CP
Trends Biochem Sci.
1997 Aug; 22(8): 296-8. PubMed: 9270302.
Abstract + PDF
4.
SPRY domains in ryanodine receptors (Ca(2+)-release channels).
Ponting C, Schultz J, Bork P
Trends Biochem Sci.
1997 Jun; 22(6): 193-4. PubMed: 9204703.
PDF
3.
SAM as a protein interaction domain involved in developmental regulation.
Schultz J, Ponting CP, Hofmann K, Bork P
Protein Sci.
1997 Jan; 6(1): 249-53. PubMed: 9007998.
Abstract + PDF
2.
Secreted fringe-like signaling molecules may be glycosyltransferases.
Yuan YP, Schultz J, Mlodzik M, Bork P
Cell.
1997 Jan 10; 88(1): 9-11. PubMed: 9019410.
PDF
1996 1 publication(s).
1.
The protein phosphatase 2C (PP2C) superfamily: detection of bacterial homologues.
Bork P, Brown NP, Hegyi H, Schultz J
Protein Sci.
1996 Jul; 5(7): 1421-5. PubMed: 8819174.
Abstract + PDF