Publications of K. Trachana

Publications of K. Trachana

The individual publication lists here have to be considered only in the context of the Bork Group.
Authors in this color are/were of Bork Group. [Altmetric off].
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2014 2 publication(s).
7.
eggNOG v4.0: nested orthology inference across 3686 organisms.
Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey CJ, Kuhn M, Jensen LJ, von Mering C, Bork P
2014 Jan 1; 42(Database issue): D231-9. Epub 2013 Dec 1; PubMed: 24297252.
Abstract + PDF
6.
A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation.
2014; 9(11): e111122. PubMed: 25369365.
Abstract + PDF
2012 2 publication(s).
5.
Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age.
Chen WH, Trachana K, Lercher MJ, Bork P
2012 Jul 7; 29(7): 1703-6. Epub 2012 Mar 7; PubMed: 22319151.
Abstract + PDF
4.
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Powell S, Szklarczyk D, Trachana K, Roth A, Kuhn M, Muller J, Arnold R, Rattei T, Letunic I, Doerks T, Jensen LJ, von Mering C, Bork P
2012 Jan 1; 40: D284-9. Epub 2011 Nov 16; PubMed: 22096231.
Abstract + PDF
2011 1 publication(s).
3.
Orthology prediction methods: A quality assessment using curated protein families.
2011 Oct 19; 33(10): 769-80. Epub 2011 Aug 19; PubMed: 21853451.
Abstract + PDF
2010 2 publication(s).
2.
Ancient animal microRNAs and the evolution of tissue identity.
Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D
2010 Feb 25; 463(7284): 1084-8. Epub 2010 Jan 31; PubMed: 20118916.
Abstract + PDF
1.
Evolution and regulation of cellular periodic processes: a role for paralogues.
Trachana K, Jensen LJ, Bork P
2010 Mar 19; 11(3): 233-8. Epub 2010 Feb 19; PubMed: 20168326.
Abstract + PDF