Publications of Bork Group in the journal "Genome Biol".

Publications of Bork Group in the journal "Genome Biol".

Authors in this color are/were of Bork Group. [Altmetric off].
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2021 2 publication(s).
16.
GUNC: detection of chimerism and contamination in prokaryotic genomes.
Genome Biol.
2021 Jun 13; 22(1): 178. PubMed: 34120611.
Abstract + PDF
15.
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox.
Wirbel J, Zych K, Essex M, Karcher N, Kartal E, Salazar G, Bork P, Sunagawa S, Zeller G
Genome Biol.
2021 Mar 30; 22(1): 93. PubMed: 33785070.
Abstract + PDF
2016 1 publication(s).
14.
Spatiotemporal variation of mammalian protein complex stoichiometries.
Ori A, Iskar M, Buczak K, Kastritis P, Parca L, Andrés-Pons A, Singer S, Bork P, Beck M
Genome Biol.
2016 Mar 14; 17(1): 47. Epub 2016 Mar 14; PubMed: 26975353.
Abstract + PDF
2015 2 publication(s).
13.
Temporal and technical variability of human gut metagenomes.
Genome Biol.
2015 Apr 8; 16(1): 73. Epub 2015 Apr 8; PubMed: 25888008.
Abstract + PDF
12.
Inter-individual differences in the gene content of human gut bacterial species.
Genome Biol.
2015 Apr 21; 16(1): 82. Epub 2015 Apr 21; PubMed: 25896518.
Abstract + PDF
2013 1 publication(s).
11.
Experimental characterization of the human non-sequence-specific nucleic acid interactome.
Duernberger G, Burckstummer T, Huber K, Giambruno R, Doerks T, Karayel E, Burkard TR, Kaupe I, Muller AC, Schonegger A, Ecker GF, Lohninger H, Bork P, Bennett KL, Superti-Furga G, Colinge J
Genome Biol.
2013 Jul 31; 14(7): R81. Epub 2013 Jul 31; PubMed: 23902751.
Abstract + PDF
2010 1 publication(s).
10.
High-resolution transcription atlas of the mitotic cell cycle in budding yeast.
Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM
Genome Biol.
2010 Mar 1; 11(3): R24. Epub 2010 Mar 1; PubMed: 20193063.
Abstract + PDF
2009 1 publication(s).
9.
Sequence-based feature prediction and annotation of proteins.
Juncker AS, Jensen LJ, Pierleoni A, Bernsel A, Tress ML, Bork P, von Heijne G, Valencia A, Ouzounis CA, Casadio R, Brunak S
Genome Biol.
2009 Feb 2; 10(2): 206. Epub 2009 Feb 2; PubMed: 19226438.
Abstract + PDF
2008 2 publication(s).
8.
Circular reasoning rather than cyclic expression.
Jensen LJ, de Lichtenberg U, Jensen TS, Brunak S, Bork P
Genome Biol.
2008 Jun 23; 9(6): 403. Epub 2008 Jun 23; PubMed: 18598377.
Abstract + PDF
7.
Selective maintenance of Drosophila tandemly-arranged duplicated genes during evolution.
Quijano C, Tomancak P, Lopez-Marti J, Suyama M, Bork P, Milan M, Torrents D, Manzanares M
Genome Biol.
2008 Dec 16; 9(12): R176. Epub 2008 Dec 16; PubMed: 19087263.
Abstract + PDF
2007 2 publication(s).
6.
Prediction of effective genome size in metagenomic samples.
Genome Biol.
2007 Jan 15; 8(1): R10. Epub 2007 Jan 15; PubMed: 17224063.
Abstract + PDF
5.
Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions.
Genome Biol.
2007; 8(9): R197. PubMed: 17880677.
Abstract + PDF
2006 1 publication(s).
4.
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana.
Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y
Genome Biol.
2006; 7(2): R13. PubMed: 16507168.
Abstract + PDF
2002 1 publication(s).
3.
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria.
Genome Biol.
2002 Aug 15; 3(9): RESEARCH0047. Epub 2002 Aug 15; PubMed: 12225586.
Abstract + PDF
2001 2 publication(s).
2.
Genome sequences and great expectations.
Iliopoulos I, Tsoka S, Andrade MA, Janssen P, Audit B, Tramontano A, Valencia A, Leroy C, Sander C, Ouzounis CA
Genome Biol.
2001; 2(1): INTERACTIONS0001. PubMed: 11178275.
Abstract + PDF
1.
Quoderat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences.
Iyer LM, Aravind L, Bork P, Hofmann K, Mushegian AR, Zhulin IB, Koonin EV
Genome Biol.
2001; 2(12): RESEARCH0051. Epub 2001 Nov 13; PubMed: 11790254.
Abstract + PDF