Publications of Bork Group in the journal "PLoS One".

Publications of Bork Group in the journal "PLoS One".

Authors in this color are/were of Bork Group. [Altmetric off].
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2021 1 publication(s).
18.
Coupling proteomics and metabolomics for the unsupervised identification of protein-metabolite interactions in Chaetomium thermophilum.
Li YY, Kuhn M, Zukowska-Kasprzyk J, Hennrich ML, Kastritis PL, O'Reilly FJ, Phapale P, Beck M, Gavin AC, Bork P
PLoS One.
2021; 16(7): e0254429. PubMed: 34242379.
Abstract + PDF
2017 1 publication(s).
17.
metaSNV: A tool for metagenomic strain level analysis.
Costea PI, Munch R, Coelho LP, Paoli L, Sunagawa S, Bork P
PLoS One.
2017; 12(7): e0182392. PubMed: 28753663.
Abstract + PDF
2016 2 publication(s).
16.
The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex.
Silva-Martin N, Daudén MI, Glatt S, Hoffmann NA, Kastritis P, Bork P, Beck M, Müller CW
PLoS One.
2016; 11(1): e0146457. PubMed: 26745716.
Abstract + PDF
15.
Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing.
Vogtmann E, Hua X, Zeller G, Sunagawa S, Voigt AY, Hercog R, Goedert JJ, Shi J, Bork P, Sinha R
PLoS One.
2016; 11(5): e0155362. PubMed: 27171425.
Abstract + PDF
2014 2 publication(s).
14.
SPI-23 of S. Derby: role in adherence and invasion of porcine tissues.
Hayward MR, AbuOun M, La Ragione RM, Tchórzewska MA, Cooley WA, Everest DJ, Petrovska L, Jansen VA, Woodward MJ
PLoS One.
2014; 9(9): e107857. PubMed: 25238397.
Abstract
13.
A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation.
PLoS One.
2014; 9(11): e111122. PubMed: 25369365.
Abstract + PDF
2012 3 publication(s).
12.
Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins.
PLoS One.
2012; 7(4): e34302. PubMed: 22485162.
Abstract + PDF
11.
MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit.
Kultima JR, Sunagawa S, Li J, Chen W, Chen H, Mende DR, Arumugam M, Pan Q, Liu B, Qin J, Wang J, Bork P
PLoS One.
2012; 7(10): e47656. PubMed: 23082188.
Abstract + PDF
10.
Assessment of metagenomic assembly using simulated next generation sequencing data.
Mende DR, Waller AS, Sunagawa S, Järvelin AI, Chan MM, Arumugam M, Raes J, Bork P
PLoS One.
2012; 7(2): e31386. PubMed: 22384016.
Abstract + PDF
2011 5 publication(s).
9.
Network neighbors of drug targets contribute to drug side-effect similarity.
PLoS One.
2011; 6(7): e22187. PubMed: 21765950.
Abstract + PDF
8.
Universally distributed single-copy genes indicate a constant rate of horizontal transfer.
Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P
PLoS One.
2011; 6(8): e22099. PubMed: 21850220.
Abstract + PDF
7.
Assessing the biological significance of gene expression signatures and co-expression modules by studying their network properties.
Minguez P, Dopazo J
PLoS One.
2011; 6(3): e17474. PubMed: 21408226.
Abstract
6.
Microbial Dysbiosis in Colorectal Cancer (CRC) Patients.
Sobhani I, Tap J, Roudot-Thoraval F, Roperch JP, Letulle S, Langella P, Corthier G, Van Nhieu JT, Furet JP
PLoS One.
2011; 6(1): e16393. PubMed: 21297998.
Abstract
5.
Rapid evolution of coral proteins responsible for interaction with the environment.
Voolstra CR, Sunagawa S, Matz MV, Bayer T, Aranda M, Buschiazzo E, Desalvo MK, Lindquist E, Szmant AM, Coffroth MA, Medina M
PLoS One.
2011; 6(5): e20392. PubMed: 21633702.
Abstract
2009 1 publication(s).
4.
Identification and gene expression analysis of a taxonomically restricted cysteine-rich protein family in reef-building corals.
Sunagawa S, Desalvo MK, Voolstra CR, Reyes-Bermudez A, Medina M
PLoS One.
2009; 4(3): e4865. PubMed: 19283069.
Abstract
2008 3 publication(s).
3.
A computational screen for type I polyketide synthases in metagenomics shotgun data.
PLoS One.
2008; 3(10): e3515. PubMed: 18953415.
Abstract + PDF
2.
A Nitrile Hydratase in the Eukaryote Monosiga brevicollis.
PLoS One.
2008; 3(12): e3976. PubMed: 19096720.
Abstract + PDF
1.
A Molecular Study of Microbe Transfer between Distant Environments.
PLoS One.
2008 Jul 9; 3(7): e2607. PubMed: 18612393.
Abstract + PDF